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Buzdin A, Tkachev V, Zolotovskaia M, Garazha A, Moshkovskii S, Borisov N,Gaifullin N, Sorokin M, Suntsova M. Using proteomic and transcriptomic data to assess activation of intracellular molecular pathways. Adv Protein Chem StructBiol. 2021;127:1-53. doi:10.1016/bs.apcsb.2021.02.005. Epub 2021 Apr 5. PMID:34340765.
Solovyeva EM, Moshkovskii SA, Gorshkov MV. Identification-Free Control overthe Precursor Isotopic Mass Misassignment in Orbitrap-Based Proteomics. J Am Soc Mass Spectrom. 2021 Jan 6;32(1):218-224. doi: 10.1021/jasms.0c00281. Epub 2020 Oct 29. PMID: 33119294.
Kuznetsova K.G., Levitsky L.I., Pyatnitskiy M.A., Ilina I.Y., Bubis J.A., Solovyeva E.M., Zgoda V.G., Gorshkov M.V., Moshkovskii S.A. Cysteine alkylation methods in shotgun proteomics and their possible effects on methionine residues. Journal of Proteomics. 2020:104022. https://doi.org/10.1016/j.jprot.2020.104022
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Levitsky L.I., Kliuchnikova A.A., Kuznetsova K.G., Karpov D.S., Ivanov M.V., Pyatnitskiy M.A., Kalinina O.V., Gorshkov M.V., Moshkovskii S.A. Adenosine-to-Inosine RNA Editing in Mouse and Human Brain Proteomes. Proteomics. 2019:e1900195. https://doi.org/10.1002/pmic.201900195 .
Kuznetsova K.G., Ivanov M.V., Pyatnitskiy M.A., Levitsky L.I., Ilina I.Y., Chernobrovkin A.L., Zubarev R.A., Gorhskov M.V., Moshkovskii S.A. Brain Proteome of Drosophila melanogaster Is Enriched with Nuclear Proteins. Biochemistry (Moscow). 2019;84(1):71-78. doi: 10.1134/S0006297919010097.
Buzdin A., Sorokin M., Garazha A., Glusker A., Aleshin A., Poddubskaya E., Sekacheva M., Kim E., Gaifullin N., Giese A., Seryakov A., Rumiantsev P., Moshkovskii S., Moiseev A. RNA sequencing for research and diagnostics in clinical oncology. Seminars in Cancer Biology. 2019: S1044-579X(19)30209-3. doi: 10.1016/j.semcancer.2019.07.010.
Solovyeva E.M., Kopysov V.N., Pereverzev A.Y., Lobas A.A., Moshkovskii S.A., Gorshkov M.V., Boyarkin O.V. Method for Identification of Threonine Isoforms in Peptides by Ultraviolet Photofragmentation of Cold Ions. Analytical Chemistry. 2019;91(10):6709-6715. doi: 10.1021/acs.analchem.9b00770.
Goncharov A.O., Kliuchnikova A.A., Nasaev S.S., Moshkovskii S.A. RNA Editing by ADAR Adenosine Deaminases: From Molecular Plasticity of Neural Proteins to the Mechanisms of Human Cancer. Biochemistry (Moscow), 2019; 84(8):896–904. doi: 10.1134/S0006297919080054.
Tarasova IA, Chumakov PM, Moshkovskii SA, Gorshkov MV. Profiling modifications for glioblastoma proteome using ultra-tolerant database search: Are the peptide mass shifts biologically relevant or chemically induced? Journal of Proteomics, 2019;191:16-21. doi: 10.1016/j.jprot.2018.05.010.
Kopylov A.T., Ponomarenko E.A., Ilgisonis E.V., Pyatnitskiy M.A., Lisitsa A.V., Poverennaya E.V., Kiseleva O.I., Farafonova T.E., Tikhonova O.V., Zavialova M.G., Novikova S.E., Moshkovskii S.A., Radko S.P., Morukov B.V., Grigoriev A.I., Paik Y.K., Salekdeh G.H., Urbani A., Zgoda V.G., Archakov A.I. 200+ Protein Concentrations in Healthy Human Blood Plasma: Targeted Quantitative SRM SIS Screening of Chromosomes 18, 13, Y and the Mitochondrial Chromosome Encoded Proteome. Journal of Proteome Research. 2019;18(1):120-129. doi: 10.1021/acs.jproteome.8b00391.
Kuznetsova K.G., Kliuchnikova A.A., Ilina I. Y., Chernobrovkin A.L., Novikova S.E., Farafonova T.E., Karpov D.S., Ivanov M.V., Goncharov A.O., Ilgisonis E.V., Voronko O.E., Nasaev S.S., Zgoda V.G., Zubarev R.A., Gorshkov M.V., Moshkovskii S.A. Proteogenomics of Adenosine-to-Inosine RNA Editing in the Fruit Fly. Journal of Proteome Research. 2018;17(11):3889-3903. doi: 10.1021/acs.jproteome.8b00553.
Pyatnitskiy M.A., Karpov D.S., Moshkovskii S.A. Searching for essential genes in cancer genomes. Biomeditsinskaya Khimiya. 2018;64(4):303-314. doi: 10.18097/PBMC20186404303.
Lobas A.A., Pyatnitskiy M.A., Chernobrovkin A.L., Ilina I.Y., Karpov D.S., Solovyeva E.M., Kuznetsova K.G., Ivanov M.V., Lyssuk E.Y., Kliuchnikova A.A., Voronko O.E., Larin S.S., Zubarev R.A., Gorshkov M.V., Moshkovskii S.A. Proteogenomics of malignant melanoma cell lines: the effect of stringency of exome data filtering on variant peptide identification in shotgun proteomics. Journal of Proteome Research. 2018;17(5):1801-1811. doi: 10.1021/acs.jproteome.7b00841.
Solovyeva E.M., Lobas A.A., Kopylov A.T., Ilina I.Y., Levitsky L.I., Moshkovskii S.A., Gorshkov MV. Fraction Optimizer: a method for optimal peptide fractionation in bottom-up proteomics. Analytical and Bioanalytical Chemistry. 2018;410(16):3827-3833. doi: 10.1007/s00216-018-1054-2.
Moshkovskii S.A., Ivanov M.V., Kuznetsova K.G., Gorshkov M.V.. Identification of Single Amino Acid Substitutions in Proteogenomics. Biochemistry (Mocow). 2018;83(3):250-258. doi: 10.1134/S0006297918030057.
Rakitov R., Moysa A.A., Kopylov A.T., Moshkovskii S.A., Peters R.S., Meusemann K., Misof B., Dietrich C.H., Johnson K.P., Podsiadlowski L., Walden K.K.O. Brochosomins and other novel proteins from brochosomes of leafhoppers (Insecta, Hemiptera, Cicadellidae). Insect Biochemistry and Molecular Biology. 2018;94:S0965-1748(18)30005-5. pii: S0965-1748(18)30005-5. doi: 10.1016/j.ibmb.2018.01.001.
Ivanov M.V., Lobas A.A., Levitsky L.I., Moshkovskii S.A., Gorshkov M.V. Brute-Force Approach for Mass Spectrometry-Based Variant Peptide Identification in Proteogenomics without Personalized Genomic Data. Journal of the American Society for Mass Spectrometry. 2018;29(2):435-438. doi: 10.1007/s13361-017-1859-9.