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Публикации

2019 год

Olekhnovich, E. I., Manolov, A. I., Samoilov, A. E., Prianichniikov, N. A., Malakhova, M. V., Pavlenko, A. V., ... & Safina, D. (2019). Shifts in the human gut microbiota structure caused by quadruple Helicobacter pylori eradication therapy. Frontiers in Microbiology, 10, 1902.
https://www.frontiersin.org/articles/10.3389/fmicb.2019.01902/full

Goloshchapov, O. V., Olekhnovich, E. I., Sidorenko, S. V., Moiseev, I. S., Kucher, M. A., Fedorov, D. E., ... & Klimina, K. M. (2019). Long-term impact of fecal transplantation in healthy volunteers. bioRxiv, 671644.

Oksana E Glushchenko, Nikita A Prianichnikov, Evgenii I Olekhnovich, Alexander I Manolov, Alexander V Tyakht, Elizaveta V Starikova, Vera E Odintsova, Elena S Kostryukova, Elena I Ilina; VERA: agent-based modeling transmission of antibiotic resistance between human pathogens and gut microbiota, Bioinformatics, https://doi.org/10.1093/bioinformatics/btz154

2018 год

Starikova, E. V., Prianichnikov, N. A., Zdobnov, E., & Govorun, V. M. (2018). Bioinformatics Analysis of Antimicrobial Resistance Genes and Prophages Colocalized in Human Gut Metagenomes. Biochemistry (Moscow), Supplement Series B: Biomedical Chemistry, 12(2), 114-118. IF 0.874 (РИНЦ)

Generozov E.V., Akhmetov I.I., Kostryukova E.S., Alekseev D.G., Egorova E.S., Larin A.K., Kulemin N.A., Ospanova E.A., Pavlenko A.V., Govorun V.M. GTR2 and sprint/power performance: a case-control replication study for rs11091046 polymorphism in two ethnicities. Biology of Sport.2018. Т. 35. № 2. С. 105-109. IF = 1.436

Rands, C. M., Starikova, E. V., Brüssow, H., Kriventseva, E. V., Govorun, V. M., & Zdobnov, E. M. (2018). ACI-1 beta-lactamase is widespread across human gut microbiomes in Negativicutes due to transposons harboured by tailed prophages. Environmental microbiology, 20(6), 2288-2300. ИФ = 5

Tyakht, A. V., Manolov, A. I., Kanygina, A. V., Ischenko, D. S., Kovarsky, B. A., Popenko, A. S., Pavlenko A.V, Elizarova A.V., Rakitina D.V., Baikova J.P., Ladygina, V. G., Kostryukova E.S., Karpova I.Y. Semashko T.A., Larin A.K., Grigoryeva T.V., Sinyagina M.N., Malanin S.Y., Scherbakov P.L., Kharitonova A.Y., Khalif I.L., Shapina M.V., Maev I.V., Andreev D.N., Belousova E.A., Buzunova Y.M., Alexeev D.G., Govorun V.M. (2018). Genetic diversity of Escherichia coli in gut microbiota of patients with Crohn’s disease discovered using metagenomic and genomic analyses. BMC genomics, 19(1), 968. IF 3.73

Stanislav S. Terekhov, Ivan V. Smirnov, Maja V. Malakhova, Andrei E. Samoilov, Alexander I. Manolov, Anton S. Nazarov, Dmitry V. Danilov, Svetlana A. Dubiley, Ilya A. Osterman, Maria P. Rubtsova, Elena S. Kostryukova, Rustam H. Ziganshin, Maria A. Kornienko, Anna A. Vanyushkina, Olga N. Bukato, Elena N. Ilina, Valentin V. Vlasov, Konstantin V. Severinov, Alexander G. Gabibov, and Sidney Altman. (2018). Ultrahigh-throughput functional profiling of microbiota communities. Proceedings of the National Academy of Sciences, 115(38), 9551-9556. IF=9.5

2017 год

Alternative splicing shapes transcriptome but not proteome diversity in Physcomitrella patens . Igor Fesenko, Regina Khazigaleeva, Ilya Kirov, Andrey Kniazev, Oksana Glushenko, Konstantin Babalyan, Georgij Arapidi, Tatyana Shashkova, Ivan Butenko, Victor Zgoda, Ksenia Anufrieva, Anna Seredina, Anna Filippova & Vadim Govorun. Scientific Reports. 2017. 7(1). 2698 https://doi.org/10.1038/s41598-017-02970-z (impact factor 4.847).

MetaCherchant: analyzing genomic context of antibiotic resistance genes in gut microbiota . Olekhnovich, E. I., Vasilyev, A. T., Ulyantsev, V. I., Kostryukova, E. S., Tyakht, A. V. Bioinformatics. 2017.1. 11. https://doi.org/10.1093/bioinformatics/btx681 (impact factor 7.307).

Microfluidic droplet platform for ultrahigh-throughput single-cell screening of biodiversity. Terekhov SS, Smirnov IV, Stepanova AV, Bobik TV, Mokrushina YA, Ponomarenko NA, Belogurov AA Jr, Rubtsova MP, Kartseva OV, Gomzikova MO, Moskovtsev AA, Bukatin AS, Dubina MV, Kostryukova ES, Babenko VV, Vakhitova MT, Manolov AI, Malakhova MV, Kornienko MA, Tyakht AV, Vanyushkina AA, Ilina EN, Masson P, Gabibov AG, Altman S. Proceedings of the National Academy of Sciences 2017. 201621226. https://doi.org/10.1073/pnas.1621226114 (impact factor 9.4)

Genome analysis of E. coli isolated from Crohn’s disease patients. Rakitina, D.V., Manolov, A.I., Kanygina, A.V., Garushyants, S.K., Baikova, J.P., Alexeev, D.G., Ladygina, V.G., Kostryukova, E.S., Larin, A.K., Semashko, T.A. and Karpova, I.Y. BMC genomics, 2017. 18(1). 544. https://doi.org/10.1186/s12864-017-3917-x (impact factor 3.9)

Outer membrane vesicles secreted by pathogenic and nonpathogenic Bacteroides fragilis represent different metabolic activities . Zakharzhevskaya, N.B., Vanyushkina, A.A., Altukhov, I.A., Shavarda, A.L., Butenko, I.O., Rakitina, D.V., Nikitina, A.S., Manolov, A.I., Egorova, A.N., Kulikov, E.E. and Vishnyakov, I.E.Scientific Reports. 2017. 7(1). 5008. https://doi.org/10.1038/s41598-017-05264-6 (impact factor 4.2)

Genome analysis of Acidiplasma sp. MBA-1, a polyextremophilic archaeon predominant in the microbial community of a bioleaching reactor. Bulaev, A.G., Kanygina, A.V. and Manolov, A.I., Microbiology. 2017. 86(1). 89-95. https://doi.org/10.1134/S0026261716060059 (impact factor 0.9)

Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease. Veronika B Dubinkina, Alexander V Tyakht, Vera Y Odintsova, Konstantin S Yarygin, Boris A Kovarsky, Alexander V Pavlenko, Dmitry S Ischenko, Anna S Popenko, Dmitry G Alexeev, Anastasiya Y Taraskina, Regina F Nasyrova, Evgeny M Krupitsky, Nino V Shalikiani, Igor G Bakulin, Petr L Shcherbakov, Lyubov O Skorodumova, Andrei K Larin, Elena S Kostryukova, Rustam A Abdulkhakov, Sayar R Abdulkhakov, Sergey Y Malanin, Ruzilya K Ismagilova, Tatiana V Grigoryeva, Elena N Ilina, Vadim M Govorun. Microbiome, 2017. 5(1). 141. https://doi.org/10.1186/s40168-017-0359-2 (impact factor 8.496)

Изменения состава микробиоты кишечника у пациентов с язвенным колитом. Данилова Н.А., Абдулхаков С.Р., Григорьева Т.В., Маркелова М.И., Павленко А.В., Тяхт А.В., Дубинкина В.Б., Кострюкова Е.С., Ларин А.К., Скородумова Л.О., Манолов А.И., Одинцова А.Х., Абдулхаков Р.А. Экспериментальная и клиническая гастроэнтерология. 2017. 6 (142). 54-60. (impact factor 0.242)

ResistoMap—online visualization of human gut microbiota antibiotic resistome. Yarygin, K. S., Kovarsky, B. A., Bibikova, T. S., Melnikov, D. S., Tyakht, A. V., & Alexeev, D. G. . Bioinformatics, 2017. 33(14). 2205-2206 https://doi.org/10.1093/bioinformatics/btx134 (impact factor 7.307)

Abundance profiling of specific gene groups using precomputed gut metagenomes yields novel biological hypotheses. Yarygin, K., Tyakht, A., Larin, A., Kostryukova, E., Kolchenko, S., Bitner, V., & Alexeev, D. . PloS one. 2017. 12(4). e0176154. https://doi.org/10.1371/journal.pone.0176154 (impact factor 2.806)

Guidelines to Statistical Analysis of Microbial Composition Data Inferred from Metagenomic Sequencing. Odintsova V., Tyakht A., Alexeev D. Current issues in molecular biology. 2017. 24. 17-36. https://doi.org/10.21775/cimb.024.017 (impact factor 5.25)

Identification of unusual peptides with new Cys frameworks in the venom of the cold-water sea anemone Cnidopus japonicus. Babenko, V.V., Mikov, A.N., Manuvera, V.A., Anikanov, N.A., Kovalchuk, S.I., Andreev, Y.A., Logashina, Y.A., Kornilov, D.A., Manolov, A.I., Sanamyan, N.P. and Sanamyan, K.E. Scientific Reports. 2017. 7. 1-14. https://doi.org/10.1038/s41598-017-14961-1 (impact factor: 4.847)

Ильина Е.Н., Олехнович Е.И., Павленко А.В. Резистом микрофлоры кишечника как источник формирования лекарственной устойчивости возбудителей инфекционных заболеваний человека. Патогенез. 2017. 15(3). 20-32. IF 0.94

Биоинформатический анализ колокализации генов резистентности и профагов в метагеномах кишечника человека. Старикова Е.В. Пряничников Н.А. Здобнов Е. Говорун В.М. Биомедицинская химия. 2017. 63(6). 508-512 http://dx.doi.org/10.18097/PBMC20176306508 IF 0.86

2016 год

Poverennaya E.V., Kopylov A.T., Ponomarenko E.A., Ilgisonis E.V., Zgoda V.G., Tikhonova O.V., ... & Vakhrushev I.V. (2016). State of the Art of Chromosome 18-Centric HPP in 2016: Transcriptome and Proteome Profiling of Liver Tissue and HepG2 Cells. Journal of Proteome Research, 15(11), 4030-4038. http://pubs.acs.org/doi/abs/10.1021/acs.jproteome.6b00380

Alexeev D., Bibikova T., Kovarsky B., Melnikov D., Tyakht A. & Govorun V. (2015). Bacterial rose garden for metagenomic SNP-based phylogeny visualization. BioData mining, 8(1), 1. http://biodatamining.biomedcentral.com/articles/10.1186/s13040-015-0045-5

Shashkova T., Popenko, A, Tyakh, A., Peskov K., Kosinsky Y., Bogolubsky L., ... & Govorun V. (2016). Agent Based Modeling of Human Gut Microbiome Interactions and Perturbations. PloS one, 11(2), e0148386. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0148386

Dubinkina V.B., Ischenko D.S., Ulyantsev V.I., Tyakht A.V., & Alexeev D.G. (2016). Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis. BMC bioinformatics, 17(1), 1. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0875-7

Ulyantsev V. I., Kazakov S. V., Dubinkina V. B., Tyakht A. V., & Alexeev D. G. (2016). MetaFast: fast reference-free graph-based comparison of shotgun metagenomic data. Bioinformatics, btw312. http://bioinformatics.oxfordjournals.org/content/early/2016/06/03/bioinformatics.btw312

Kashtanova D.A., Popenko A.S., Tkacheva O.N., Tyakht A.B., Alexeev D.G., & Boytsov S.A. (2016). Association between the gut microbiota and diet: Fetal life, early childhood, and further life. Nutrition, 32(6), 620-627. https://www.ncbi.nlm.nih.gov/pubmed/26946974

Dubinkina V.B., Tyakht A.V., Ilina E.N., Ischenko D.S., Kovarsky B.A., Yarygin K.S., ... & Nasyrova R.F. (2016). Metagenomic analysis of taxonomic and functional changes in gut microbiota of patients with the alcohol dependence syndrome. Biochemistry (Moscow) Supplement Series B: Biomedical Chemistry, 10(2), 184-190. http://link.springer.com/article/10.1134/S1990750816020037

Egshatyan L., Kashtanova D., Popenko A., Tkacheva O., Tyakht A., Alexeev D., ... & Boytsov S. (2016). Gut microbiota and diet in patients with different glucose tolerance. Endocrine Сonnections, 5(1), 1-9. http://www.endocrineconnections.com/content/early/2015/11/10/EC-15-0094 .abstract

Yarygin K., Kovarsky B., Bibikova T., Melnikov D., Tyakht A., & Alexeev D. (2016). ResistoMap-online visualization of human gut microbiota antibiotic resistome. bioRxiv, 070714. http://biorxiv.org/content/biorxiv/early/2016/08/23/070714.full.pdf

Egshatyan L.V., Tkacheva O.N., Kafarskaya L.I., Shkoporov A.N., & Tyakht A.V. (2015). The changes of gut microbiota associated with age and lifestyle. Obesity and Metabolism, 12(2), 3-9. https://www.researchgate.net/publication/290244199_The_changes_of_gut_microbiota_associated_with_age_and_lifestyle

Шаликиани Н.В., Бакулин И.Г., Дубинкина В.Б., Ищенко Д.С., Алексеев Д.Г., Тяхт А.В., ... & Скородумова Л.О. (2015). Особенности состава микробиоты кишечника у пациентов с алкогольным циррозом печени. Терапевтический архив, 3, 12. http://www.fesmu.ru/elib/Article.aspx?id=327877

Kostryukova E.S., Karpova I.Y., Larin A.K., Popenko A.C., Tyaht A.V., & Ilina E.N. (2015). Variability in the relative human DNA content during metagenomic analysis of gut microbiota. Biochemistry (Moscow) Supplement Series B: Biomedical Chemistry, 9(3), 290-295. http://link.springer.com/article/10.1134/S1990750815030038

Igor A Fesenko, Georgij P Arapidi, Alexander Y Skripnikov, Dmitry G Alexeev, Elena S Kostryukova, Alexander I Manolov, Ilya A Altukhov, Regina A Khazigaleeva, Anna V Seredina, Sergey I Kovalchuk, Rustam H Ziganshin, Viktor G Zgoda, Svetlana E Novikova, Tatiana A Semashko, Darya K Slizhikova, Vasilij V Ptushenko, Alexey Gorbachev, Vadim M Govorun, Vadim T Ivanov, Specific pools of endogenous peptides are present in gametophore, protonema, and protoplast cells of the moss Physcomitrella patens, BMC Plant Biology 2015, 15:87, doi:10.1186/s12870-015-0468-7

Eugene E. Kulikov, Alla K. Golomidova, Maria A. Letarova, Elena S. Kostryukova, Alexandr S. Zelenin, Nikolai S. Prokhorov and Andrey V. Letarov, Genomic Sequencing and Biological Characteristics of a Novel Escherichia Coli Bacteriophage 9g, a Putative Representative of a New Siphoviridae Genus, Viruses 2014, 6(12), 5077-5092; doi:10.3390/v6125077

Mustafina LJ, Naumov VA, Cieszczyk P, Popov DV, Lyubaeva EV, Kostryukova ES,Fedotovskaya ON, Druzhevskaya AM, Astratenkova IV, Glotov AS, Alexeev DG,Mustafina MM, Egorova ES, Maciejewska-Karłowska A, Larin AK, Generozov EV,Nurullin RE, Jastrzębski Z, Kulemin NA, Ospanova EA, Pavlenko AV, Sawczuk M,Akimov EB, Danilushkina AA, Zmijewski P, Vinogradova OL, Govorun VM, Ahmetov II. AGTR2 gene polymorphism is associated with muscle fibre composition, athleticstatus and aerobic performance. Exp Physiol. 2014 May 30. . doi: 10.1113/expphysiol.2014.

Ahmetov II, Naumov VA, Donnikov AE, Maciejewska-Karłowska A, Kostryukova ES,Larin AK, Maykova EV, Alexeev DG, Fedotovskaya ON, Generozov EV, Jastrzębski Z,Zmijewski P, Kravtsova OA, Kulemin NA, Leonska-Duniec A, Martykanova DS, Ospanova EA, Pavlenko AV, Podol’skaya AA, Sawczuk M, Alimova FK, Trofimov DY, Govorun VM, Cieszczyk P. SOD2 gene polymorphism and muscle damage markers in elite athletes. Free Radic Res. 2014 Aug;48(8):948-55. doi: 10.3109/10715762.2014.928410. Epub2014 Jun 23

Tyakht AV, Alexeev DG, Popenko AS, Govorun VM. Rural and urban microbiota: To be or not to be? Gut Microbes. 2014 Apr 1;5(3). doi: 10.4161/gmic.28685.

Shitikov EA, Bespyatykh JA, Ischenko DS, Alexeev DG, Karpova IY, KostryukovaES, Isaeva YD, Nosova EY, Mokrousov IV, Vyazovaya AA, Narvskaya OV, VishnevskyBI, Otten TF, Zhuravlev VY, Yablonsky PK, Ilina EN, Govorun VM. Unusuallarge-scale chromosomal rearrangements in Mycobacterium tuberculosis BeijingB0/W148 cluster isolates. PLoS One. 2014 Jan 8;9(1):e84971. doi:10.1371/journal.pone.0084971. eCollection 2014. PubMed PMID: 24416324; PubMedCentral PMCID: PMC3885621.

Ponomarenko EA, Kopylov AT, Lisitsa AV, Radko SP, Kiseleva YY, Kurbatov LK,Ptitsyn KG, Tikhonova OV, Moisa AA, Novikova SE, Poverennaya EV, Ilgisonis EV,Filimonov AD, Bogolubova NA, Averchuk VV, Karalkin PA, Vakhrushev IV, Yarygin KN,Moshkovskii SA, Zgoda VG, Sokolov AS, Mazur AM, Prokhortchouck EB, Skryabin KG,Ilina EN, Kostrjukova ES, Alexeev DG, Tyakht AV, Gorbachev AY, Govorun VM,Archakov AI. Chromosome 18 transcriptoproteome of liver tissue and HepG2 cellsand targeted proteome mapping in depleted plasma: update 2013. J Proteome Res.2014 Jan 3;13(1):183-90. doi: 10.1021/pr400883x. Epub 2013 Dec 13. PubMed PMID:24328317.

Irina V Prokhorova, Ilya A Osterman, Dmitry E Burakovsky, Marina V Serebryakova, Maria A Galyamina, Olga V Pobeguts, Ilya Altukhov, Sergey Kovalchuk, Dmitry G Alexeev, Vadim M Govorun, Alexey A Bogdanov, Petr V Sergiev, Olga A Dontsova, Modified nucleotides m2G966/m5C967 of Escherichia coli 16S rRNA are required for attenuation of tryptophan operon, Nature Scientific Reports, 3, 3236 doi:10.1038/srep03236

Gorbachev Y Alexey, Fisunov Y Gleb, Izraelson Mark, Evsyutina V Darya, Mazin V Pavel, Alexeev G Dmitry, Pobeguts V Olga, Gorshkova N Tatyana, Kovalchuk I Sergey, Kamashev E Dmitry, Govorun M Vadim, DNA repair in Mycoplasma gallisepticum, BMC Genomics.2013, 14:726.

Elena N Ilina, Egor A Shitikov, Larisa N Ikryannikova, Dmitry G Alekseev, Dmitri E Kamashev, Maja V Malakhova, Tatjana V Parfenova, Maxim V Afanas’ev, Dmitry S Ischenko, Nikolai A Bazaleev, Tatjana G Smirnova, Elena E Larionova, Larisa N Chernousova, Alexey V Beletsky, Andrei V Mardanov, Nikolai V Ravin, Konstantin G Skryabin, Vadim M Govorun, Comparative Genomic Analysis of Mycobacterium tuberculosis Drug Resistant Strains from Russia, PLoS ONE 8(2):e56577. doi:10.1371/journal.pone.0056577

Tatiana V. Grigoryeva, Aleksandr V. Laikov, Rimma P. Naumova, Aleksandr I. Manolov, Andrey K. Larin, Irina Y. Karpova, Tatiana A. Semashko, Dmitry G. Alexeev, Elena S. Kostryukova, Rudolf Müllerd, Vadim M. Govorun, Draft genome of the nitrogen-fixing bacterium Pseudomonas stutzeri strain KOS6 isolated from industrial hydrocarbon sludge, doi: 10.1128/genomeA.00072-12 Genome Announc. January/February 2013 vol. 1 no. 1 e00072-12

D.D. Kharlampieva, V.A. Manuvera, O.V. Podgorny, S.I. Kovalchuk, O.V. Pobeguts, I.A. Altukhov, D.G. Alexeev, V.N. Lazarev, V.M. Govorun, Purification and characterisation of recombinant Bacteroides fragilis toxin-2, Biochimie 95 (2013) 2123-2131. doi: 10.1016/j.biochi.2013.08.005.

Zgoda, Victor G., Arthur T. Kopylov, Olga V. Tikhonova, Alexander A. Moisa, Nadezhda V. Pyndyk, Tatyana E. Farafonova, Svetlana E. Novikova, Andrey V. Lisitsa, Elena A. Ponomarenko, Ekaterina V. Poverennaya, Sergey P. Radko, Svetlana A. Khmeleva, Leonid K. Kurbatov, Aleksey D. Filimonov, Nadezhda A. Bogolyubova, Ekaterina V. Ilgisonis, Aleksey L. Chernobrovkin, Alexis S. Ivanov, Alexei E. Medvedev, Yury V. Mezentsev, Sergei A. Moshkovskii, Stanislav N. Naryzhny, Elena N. Ilina, Elena S. Kostryukova, Dmitry G. Alexeev, Alexander V. Tyakht, Vadim M. Govorun, and Alexander I. Archakov. Chromosome 18 Transcriptome Profiling and Targeted Proteome Mapping in Depleted Plasma, Liver Tissue and HepG2 Cells. Journal of Proteome Research 12, no. 1 (2012): 123-134. doi: 10.1021/pr300821n

Алексеев Д.Г., Кострюкова Е.С., Попенко А.С., Русаловский И.В., Тяхт А.В. Потенциальные возможности использования распределенных вычислительных систем при решении концептуальных проблем построения информационных комплексов обработки данных высокопроизводительного геномного секвенирования и глубокого протеомного профилирования.. Информатизация и связь, 8 (2012)

Alexander V Tyakht1, Anna S Popenko, Maxim S Belenikin, Ilya A Altukhov, Alexander V Pavlenko, Elena S Kostryukova, Oksana V Selezneva, Andrei K Larin, Irina Y Karpova and Dmitry G Alexeev, MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads. Source Code for Biology and Medicine 2012, 7:13 doi:10.1186/1751-0473-7-13

Tyakht AV, Kostryukova ES, Popenko AS, Belenikin MS, Pavlenko AS, Larin AK, Karpova IY, Selezneva OV, Semashko TA, Ospanova EA, Babenko VV, Maev IV, Cheremushkin SV, Kucheryavy YA, Shcherbakov PL, Grinevich VB, Efimov OI, Sas EI, Abdulkhakov RA, Abdulkhakov SA, Lyalyukova EA, Livzan EA, Vlassov VV, Sagdeev RZ, Tsukanov VV, Osipenko MF, Kozlova IV, Tkachev AV, Sergienko VI, Alexeev DG., Govorun V.M., Human gut microbiota compositions found across urban and rural populations of Russia. Nature Communications 2013, doi:10.1038/ncomms3469

Ziganshin RKh, Alekseev DG, Arapidi GP, Ivanov VT, Moshkovskiĭ SA, Govorun VM. Serum proteome profiling for ovarion cancer diagnosis using. ClinProt magnetic bead technique and MALDI-TOF-mass-spectrometry. Biomed Khim. 2008 Jul-Aug;54(4):408-19. Russian.

Lazarev VN, Levitskii SA, Basovskii YI, Chukin MM, Akopian TA, Vereshchagin VV, Kostrjukova ES, Kovaleva GY, Kazanov MD, Malko DB, Vitreschak AG, Sernova NV, Gelfand MS, Demina IA, Serebryakova MV, Galyamina MA, Vtyurin NN, Rogov SI, Alexeev DG, Ladygina VG, Govorun VM. Complete genome and proteome of Acholeplasma laidlawii. J Bacteriol. 2011 Sep;193(18):4943-53. doi: 10.1128/JB.05059-11.

Momynaliev KT, Kashin SV, Chelysheva VV, Selezneva OV, Demina IA, Serebryakova MV, Alexeev D, Ivanisenko VA, Aman E, Govorun VM. Functional divergence of Helicobacter pylori related to early gastric cancer. J Proteome Res. 2010 Jan;9(1):254-67. doi: 10.1128/JB.05059-11.

Demina IA, Serebriakova MV, Ladygina VG, Galiamina MA, Zhukova NA, Alekseev DG, Fisunov GIu, Govorun VM. Comparative proteomic characteristic of Mycoplasmas (Mollycutes). Bioorg Khim. 2011 Jan-Feb;37(1):70-80. Russian.

Ziganshin R, Arapidi G, Azarkin I, Zaryadieva E, Alexeev D, Govorun V, Ivanov V. New method for peptide desorption from abundant blood proteins for plasma/serum peptidome analyses by mass spectrometry. J Proteomics. 2011 May 1;74(5):595-606. doi: 10.1016/j.jprot.2011.01.014.

Fisunov GY, Alexeev DG, Bazaleev NA, Ladygina VG, Galyamina MA, Kondratov IG, Zhukova NA, Serebryakova MV, Demina IA, Govorun VM. Core proteome of the minimal cell: comparative proteomics of three mollicute species. PLoS One. 2011;6(7):e21964. doi: 10.1371/journal.pone.0021964.

Alexeev Dmitry, Kostrjukova Elena, Aliper Alexander, Popenko Anna, Bazaleev Nikolay, Tyakht Alexander, Selezneva Oksana, Akopian Tatyana, Prichodko Elena, Kondratov Ilya, Chukin Mikhail, Demina Irina, Galyamina Maria, Kamashev Dmitri, Vanyushkina Anna, Ladygina Valentina, Levitskii Sergei, Lazarev Vasily and Govorun Vadim The application of Spiroplasma melliferum proteogenomic profiling for the discovery of virulence factors and pathogenicity mechanisms in host-associated spiroplasmas J. Proteome Res., DOI: 10.1021/pr2008626 Publication Date (Web): November 30, 201

Nadezhda F. Polina, Marina M. Shkarupeta, Anna S. Popenko, Alexander A. Vassilevski, Sergey A. Kozlov, Eugene V. Grishin, Vassili N. Lazarev, Vadim M. Govorun Cyto-Insectotoxin 1a from Lachesana tarabaevi Spider Venom Inhibits Chlamydia trachomatis Infection, Probiotics & Antimicro. Prot. (2012) 4:208–216, DOI 10.1007/s12602-012-9108-9