Павел Мазин

Мазин Павел
Мазин Павел

Personal data:
Business address: Bolshoy Karetny per. 19, Moscow, 127994, Russia
Date and place of birth: June 10, 1985, Moscow Region, Russia
Citizenship: Russian Federation
E-mail: iaa.aka[at]gmail.com

Образование
2002 - 2006 Department of Chemistry, Moscow State University, Moscow, Russia.
2006 - 2008 Department of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia
2008 Master of science in Biology
2012 CSHL Genomic Data Analysis Course, Moscow, Russia, 2-11 Jule 2012.
Опыт работы
Карьерная история:
2002 - 2006 MS Student, Department of Chemistry, Moscow State University, Moscow, Russia.
2006 - 2008 MS Student, Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia.
2008 - 2011 Ph.D. student, Department of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia.
2010 - 2011 Visiting scientist, PICB-CAS, Shanghai, China
2011 - present Institute for Information Transmission Problems RAS, Moscow, Russia (http://ippi.ru)
2013 – present Institute of Physico-Chemical Medicine RAS, Moscow, Russia

Опыт:
o Prediction of specificity determining positions in multiple protein alignments (MS thesis).
o Computational analysis of age related changes of alternative splicing
o Transcriptomics in bacteria

Публикации
o E.V.Antipov, A.G.Borzenko, V.M.Denisov, A.Yu.Filatov, V.V.Ivanov, S.M.Kazakov, P.V.Mazin, V.M.Mazin, V.I.Shtanov, D.A.Simakov, G.A.Tsirlina, S.Yu.Vassiliev, Yu.A.Velikodny, Electrochemical behavior of metals and binary alloys in cryolite-alumina melts. Light metals 2006, 403-408.

o Pavel V Mazin, Mikhail S Gelfand, Andrey A Mironov, Aleksandra B Rakhmaninova, Anatoly R Rubinov, Robert B Russell and Olga V Kalinina. An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies. Algorithms for Molecular Biology 2010, 5:29

o Pavel Mazin, Jieyi Xiong, Xiling Liu1, Zheng Yan, Xiaoyu Zhang, Mingshuang Li, Liu He, Mehmet Somel, Yuan Yuan, Yi-Ping Phoebe Chen, Na Li, Yuhui Hu, Ning Fu, Zhibin Ning, Rong Zeng, Hongyi Yang, Wei Chen, Mikhail Gelfand and Philipp Khaitovich. Widespread splicing changes in human brain development and aging. Mol Syst Biol. 2013 Jan 22;9:633.

Конференции
o P. V. Mazin, O. V. Kalinina. SDPlight – a fast method for searching positions that determine specificity in protein alignments. The XIV Int Scientific Conf for undergraduate and postgraduate students, and young scientists “Lomonossov”. 11 - 14 April 2007 (poster presentation).

o P.V. Mazin A.B.Rakhmaninova, O.V. Kalinina. SDPclust: a new tool for prediction protein specificity in MPA. Moscow Conference on Computational Molecular Biology `07 (poster presentation)

o P.V. Mazin. SDPclust — program package for protein substrate specificity prediction. Information Technologies and Systems (ItaS). P 269-270. September 18-21, 2007, Zvenigorod, Russia (poster presentation)

o P. V. Mazin, O. V. Kalinina. SDPfox – a Web-server for prediction of protein specificity and specificity determinants from multiple sequence alignment. The XV Int Scientific Conf for undergraduate and postgraduate students, and young scientists “Lomonossov”. 11 - 14 April 2008 (poster presentation).

o P.V. Mazin, A.A. Mironov, A.B. Rakhmaninova, M.S. Gelfand, O.V.Kalinina. SDPfox: A tool to predict protein specificity and specificity determinants from multiple sequence alignment. The Sixth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2008), Novosibirsk, Russia, June 22-28, 2008 (poster presentation).

o P.V. Mazin, O.V.Kalinina, A.B. Rakhmaninova, A.A. Mironov, M.S. Gelfand. SDPfox - a Web-server for protein substrate specificity analysis. Information Technologies and Systems (ITaS). 266-267. September 29 – October 3, 2008, Gelendzhik, Russia (oral presentation)

o P.V. Mazin, P.Khaitovich, A.A. Mironov, M.S. Gelfand Investigation of age related alternative splicing changes in human brain using solexa sequencing. Moscow Conference on Computational Molecular Biology `09 (poster presentation)

o A.A. Adzhubei, A.V. Vlasova, P.V. Mazin. Qasmod: Protein Model Quality Assessment Suite. The Seventh International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2010), Novosibirsk, Russia, June 20-27, 2010 (poster presentation).

o P. Mazin, M. Gelfand, P. Khaitovich. Splicing changes in human brain over the course of lifespan. CSH-Asia Сonference “Computational Biology”. Suzhou, China, 27.09-1.10.2010 (poster presintation)

o P. Mazin, M. Gelfand, P. Khaitovich. Splicing differences in primate brain development. Moscow Conference on Computational Molecular Biology `11 (poster presentation)

o P.Mazin, P.Khaitovich. Splicing differences during primate brain development. Information Technologies and Systems (ITaS). October 2 – 7, 2011, Gelendzhik, Russia (oral presentation)

o P. Mazin, M. Gelfand, P. Khaitovich. Age changes and tissue differences of alternative splicing in the primate brain. The Eighth Winter Symposium on Chemometrics, Moscow, Febrary 27 - March 2, 2012 (oral presentation)

o P. Mazin, P. Khaitovich. Age-related splicing changes in human, chimpanzee and monkey brains. Conf for young scientists, Molecular and cell biology: practical aspects, April 13, 2012, Moscow (oral presentation).

o P. Mazin, P. Khaitovich, M. Gelfand. Widespread differences in age-related splicing patterns between higher primates. Information Technologies and Systems (ITaS). August 19 – 25, 2012, Petrozavodsk, Russia (poster presentation)

o Mazin P., Xiong J., Liu X. Widespread splicing changes in human brain development and aging. ECCB'12 - European Conference on Computational Biology 2012, 9-12 September 2012, Basel Switzerland.

o Mazin P., Khaitovich P. Conserved age-related splicing regulation in primate brains. Moscow Conference on Computational Molecular Biology `13 (oral presentation)

Навыки
o Java programming: algorithms, databases (JDBC, MySQL), graphics (AWT, Swing)
o Perl programming
o Web-programming: html, javascript (AJAX), css, jsp.
o SQL programming
o R programming
o Biostatistics
Научные интересы
o Alternative splicing.
o Genomics.
o Transcriptomics
o Human evolution
o Brain development