Наши публикации

  1. Guilherme JPLF, Semenova EA, Borisov OV, Kostryukova ES, Vepkhvadze TF, Lysenko EA, Andryushchenko ON, Andryushchenko LB, Lednev EM, Larin AK, Bondareva EA, Generozov EV, Ahmetov II. The BDNF-Increasing Allele is Associated With Increased Proportion of Fast-Twitch Muscle Fibers, Handgrip Strength, and Power Athlete Status. J Strength Cond Res. 2022 Jul 1;36(7):1884-1889. doi: 10.1519/JSC.0000000000003756. Epub 2020 Dec 9. PMID: 33306590.
  2. Kuptsov N, Kornienko M, Bespiatykh D, Gorodnichev R, Klimina K, Veselovsky V, Shitikov E. Global Transcriptomic Response of Staphylococcus aureus to Virulent Bacteriophage Infection. Viruses. 2022 Mar 9;14(3):567. doi: 10.3390/v14030567. PMID: 35336974; PMCID: PMC8950790.
  3. Shitikov E, Bespiatykh D, Malakhova M, Bespyatykh J, Bodoev I, Vedekhina T, Zaychikova M, Veselovsky V, Klimina K, Ilina E, Varizhuk A. Genome-Wide Transcriptional Response of Mycobacterium smegmatis MC2155 to G-Quadruplex Ligands BRACO-19 and TMPyP4. Front Microbiol. 2022 Mar 4;13:817024. doi: 10.3389/fmicb.2022.817024. PMID: 35308348; PMCID: PMC8931766.
  4. Konanov DN, Krivonos DV, Ilina EN, Babenko VV. BioCAT: Search for biosynthetic gene clusters producing nonribosomal peptides with known structure. Comput Struct Biotechnol J. 2022 Mar 4;20:1218-1226. doi: 10.1016/j.csbj.2022.02.013. PMID: 35317229; PMCID: PMC8914306.
  5. Saito M, Ginszt M, Semenova EA, Massidda M, Huminska-Lisowska K, Michałowska-Sawczyn M, Homma H, Cięszczyk P, Okamoto T, Larin AK, Generozov EV, Majcher P, Nakazato K, Ahmetov II, Kikuchi N. Is COL1A1 Gene rs1107946 Polymorphism Associated with Sport Climbing Status and Flexibility? Genes (Basel). 2022 Feb 23;13(3):403. doi: 10.3390/genes13030403. PMID: 35327955; PMCID: PMC8954011.
  6. Guilherme JPLF, Semenova EA, Borisov OV, Larin AK, Moreland E, Generozov EV, Ahmetov II. Genomic predictors of testosterone levels are associated with muscle fiber size and strength. Eur J Appl Physiol. 2022 Feb;122(2):415-423. doi: 10.1007/s00421-021-04851-w. Epub 2021 Nov 18. PMID: 34792618; PMCID: PMC8783862.
  7. Hall ECR, Semenova EA, Bondareva EA, Andryushchenko LB, Larin AK, Cięszczyk P, Generozov EV, Ahmetov II. Association of Genetically Predicted BCAA Levels with Muscle Fiber Size in Athletes Consuming Protein. Genes (Basel). 2022 Feb 23;13(3):397. doi: 10.3390/genes13030397. PMID: 35327951; PMCID: PMC8955300.
  8. Baranova MN, Kudzhaev AM, Mokrushina YA, Babenko VV, Kornienko MA, Malakhova MV, Yudin VG, Rubtsova MP, Zalevsky A, Belozerova OA, Kovalchuk S, Zhuravlev YN, Ilina EN, Gabibov AG, Smirnov IV, Terekhov SS. Deep Functional Profiling of Wild Animal Microbiomes Reveals Probiotic Bacillus pumilus Strains with a Common Biosynthetic Fingerprint. Int J Mol Sci. 2022 Jan 21;23(3):1168. doi: 10.3390/ijms23031168. PMID: 35163108; PMCID: PMC8835302.
  9. Makarieva TN, Romanenko LA, Mineev KS, Shubina LK, Guglya EB, Kalinovskaya NI, Ivanchina NV, Guzii AG, Belozerova OA, Kovalchuk SI, Popov RS, Denisenko VA, Mikhailov VV, Babenko VV, Ilina EN, Malakhova MV, Terekhov SS, Kudzhaev AM, Dmitrenok PS, Yampolsky IV, Stonik VA. Streptocinnamides A and B, Depsipeptides from Streptomyces sp. KMM 9044. Org Lett. 2022 Jun 30. doi: 10.1021/acs.orglett.2c01714. Epub ahead of print. PMID: 35770905.
  10. Fisunov GY, Pobeguts OV, Ladygina VG, Zubov AI, Galyamina MA, Kovalchuk SI, Ziganshin RK, Evsyutina DV, Matyushkina DS, Butenko IO, Bukato ON, Veselovsky VA, Semashko TA, Klimina KM, Levina GA, Barhatova OI, Rakovskaya IV. Thymidine utilisation pathway is a novel phenotypic switch of Mycoplasma hominis. J Med Microbiol. 2022 Jan;71(1):001468. doi: 10.1099/jmm.0.001468. PMID: 35037614; PMCID: PMC8895549.
  11. Olekhnovich EI, Batotsyrenova EG, Yunes RA, Kashuro VA, Poluektova EU, Veselovsky VA, Ilina EN, Danilenko VN, Klimina KM. The effects of Levilactobacillus brevis on the physiological parameters and gut microbiota composition of rats subjected to desynchronosis. Microb Cell Fact. 2021 Dec 20;20(1):226. doi: 10.1186/s12934-021-01716-x. PMID: 34930242; PMCID: PMC8686522.
  12. Tikhonova P, Pavlova I, Isaakova E, Tsvetkov V, Bogomazova A, Vedekhina T, Luzhin AV, Sultanov R, Severov V, Klimina K, Kantidze OL, Pozmogova G, Lagarkova M, Varizhuk A. DNA G-Quadruplexes Contribute to CTCF Recruitment. Int J Mol Sci. 2021 Jun 30;22(13):7090. doi: 10.3390/ijms22137090. PMID: 34209337; PMCID: PMC8269367.
  13. Vatlin AA, Shitikov EA, Shahbaaz M, Bespiatykh DA, Klimina KM, Christoffels A, Danilenko VN, Maslov DA. Transcriptomic Profile of Mycobacterium smegmatis in Response to an Imidazo[1,2-b][1,2,4,5]tetrazine Reveals Its Possible Impact on Iron Metabolism. Front Microbiol. 2021 Aug 4;12:724042. doi: 10.3389/fmicb.2021.724042. PMID: 34421882; PMCID: PMC8371482.
  14. Gorodnichev RB, Volozhantsev NV, Krasilnikova VM, Bodoev IN, Kornienko MA, Kuptsov NS, Popova AV, Makarenko GI, Manolov AI, Slukin PV, Bespiatykh DA, Verevkin VV, Denisenko EA, Kulikov EE, Veselovsky VA, Malakhova MV, Dyatlov IA, Ilina EN, Shitikov EA. Novel Klebsiella pneumoniae K23-Specific Bacteriophages From Different Families: Similarity of Depolymerases and Their Therapeutic Potential. Front Microbiol. 2021 Aug 9;12:669618. doi: 10.3389/fmicb.2021.669618. PMID: 34434173; PMCID: PMC8381472.
  15. Olekhnovich EI, Ivanov AB, Ulyantsev VI, Ilina EN. Separation of Donor and Recipient Microbial Diversity Allows Determination of Taxonomic and Functional Features of Gut Microbiota Restructuring following Fecal Transplantation. mSystems. 2021 Aug 31;6(4):e0081121. doi: 10.1128/mSystems.00811-21. Epub 2021 Aug 17. PMID: 34402648; PMCID: PMC8407411.
  16. Balmasova IP, Olekhnovich EI, Klimina KM, Korenkova AA, Vakhitova MT, Babaev EA, Ovchinnikova LA, Lomakin YA, Smirnov IV, Tsarev VN, Mkrtumyan AM, Belogurov AA Jr, Gabibov AG, Ilina EN, Arutyunov SD. Drift of the Subgingival Periodontal Microbiome during Chronic Periodontitis in Type 2 Diabetes Mellitus Patients. Pathogens. 2021 Apr 22;10(5):504. doi: 10.3390/pathogens10050504. PMID: 33922308; PMCID: PMC8145315.
  17. Letarov AV, Babenko VV, Kulikov EE. Free SARS-CoV-2 Spike Protein S1 Particles May Play a Role in the Pathogenesis of COVID-19 Infection. Biochemistry (Mosc). 2021 Mar;86(3):257-261. doi: 10.1134/S0006297921030032. PMID: 33838638; PMCID: PMC7772528.
  18. Kikuchi N, Moreland E, Homma H, Semenova EA, Saito M, Larin AK, Kobatake N, Yusupov RA, Okamoto T, Nakazato K, Williams AG, Generozov EV, Ahmetov II. Genes and Weightlifting Performance. Genes (Basel). 2021 Dec 23;13(1):25. doi: 10.3390/genes13010025. PMID: 35052366; PMCID: PMC8775245.
  19. Ginevičienė V, Jakaitienė A, Utkus A, Hall ECR, Semenova EA, Andryushchenko LB, Larin AK, Moreland E, Generozov EV, Ahmetov II. CKM Gene rs8111989 Polymorphism and Power Athlete Status. Genes (Basel). 2021 Sep 25;12(10):1499. doi: 10.3390/genes12101499. PMID: 34680894; PMCID: PMC8536047.
  20. Guilherme JPLF, Semenova EA, Zempo H, Martins GL, Lancha Junior AH, Miyamoto-Mikami E, Kumagai H, Tobina T, Shiose K, Kakigi R, Tsuzuki T, Ichinoseki-Sekine N, Kobayashi H, Naito H, Borisov OV, Kostryukova ES, Kulemin NA, Larin AK, Generozov EV, Fuku N, Ahmetov II. Are Genome-Wide Association Study Identified Single-Nucleotide Polymorphisms Associated With Sprint Athletic Status? A Replication Study With 3 Different Cohorts. Int J Sports Physiol Perform. 2021 Apr 1;16(4):489-495. doi: 10.1123/ijspp.2019-1032. Epub 2020 Oct 15. PMID: 33059329.
  21. Guilherme JPLF, Bosnyák E, Semenova EA, Szmodis M, Griff A, Móra Á, Almási G, Trájer E, Udvardy A, Kostryukova ES, Borisov OV, Larin AK, Andryushchenko LB, Akimov EB, Generozov EV, Ahmetov II, Tóth M, Junior AHL. The MCT1 gene Glu490Asp polymorphism (rs1049434) is associated with endurance athlete status, lower blood lactate accumulation and higher maximum oxygen uptake. Biol Sport. 2021 Sep;38(3):465-474. doi: 10.5114/biolsport.2021.101638. Epub 2020 Dec 22. PMID: 34475628; PMCID: PMC8329966.
  22. Frolova SG, Klimina KM, Kumar R, Vatlin AA, Salunke DB, Kendrekar P, Danilenko VN, Maslov DA. Identification of Mutations Conferring Tryptanthrin Resistance to Mycobacterium smegmatis. Antibiotics (Basel). 2020 Dec 23;10(1):6. doi: 10.3390/antibiotics10010006. PMID: 33374765; PMCID: PMC7823563.
  23. Olekhnovich EI, Manolov AI, Pavlenko AV, Konanov DN, Fedorov DE, Tikhonova PO, Glushchenko OE, Ilina EN. Vliianie mikrobioma kishechnika na éffektivnost' protivoopukholevoĭ immunoterapii [Intestinal microbiom modulates the response to antitumor immunotherapy]. Biomed Khim. 2020 Jan;66(1):54-63. Russian. doi: 10.18097/PBMC20206601054. PMID: 32116226.
  24. Kornienko M, Fisunov G, Bespiatykh D, Kuptsov N, Gorodnichev R, Klimina K, Kulikov E, Ilina E, Letarov A, Shitikov E. Transcriptional Landscape of Staphylococcus aureus Kayvirus Bacteriophage vB_SauM-515A1. Viruses. 2020 Nov 17;12(11):1320. doi: 10.3390/v12111320. PMID: 33213043; PMCID: PMC7698491.
  25. Kornienko M, Kuptsov N, Gorodnichev R, Bespiatykh D, Guliaev A, Letarova M, Kulikov E, Veselovsky V, Malakhova M, Letarov A, Ilina E, Shitikov E. Contribution of Podoviridae and Myoviridae bacteriophages to the effectiveness of anti-staphylococcal therapeutic cocktails. Sci Rep. 2020 Oct 29;10(1):18612. doi: 10.1038/s41598-020-75637-x. PMID: 33122703; PMCID: PMC7596081.
  26. Bespyatykh J, Shitikov E, Bespiatykh D, Guliaev A, Klimina K, Veselovsky V, Arapidi G, Dogonadze M, Zhuravlev V, Ilina E, Govorun V. Metabolic Changes of Mycobacterium tuberculosis during the Anti-Tuberculosis Therapy. Pathogens. 2020 Feb 18;9(2):131. doi: 10.3390/pathogens9020131. PMID: 32085490; PMCID: PMC7168336.
  27. Bespyatykh J, Bespiatykh D, Malakhova M, Klimina K, Bespyatykh A, Varizhuk A, Tevyashova A, Nikolenko T, Pozmogova G, Ilina E, Shitikov E. Aureolic Acid Group of Agents as Potential Antituberculosis Drugs. Antibiotics (Basel). 2020 Oct 19;9(10):715. doi: 10.3390/antibiotics9100715. PMID: 33086595; PMCID: PMC7650759.
  28. Fedorov DE, Olekhnovich EI, Pavlenko AV, Klimina KM, Pokataev IA, Manolov AI, Konanov DN, Veselovsky VA, Ilina EN. Mikrobiom kishechnika kak prediktor uspekha anti-PD1 terapii: analiz metagenomnykh dannykh [Intestinal microbiome as a predictor of the anti-PD-1 therapy success: metagenomic data analysis]. Biomed Khim. 2020 Nov;66(6):502-507. Russian. doi: 10.18097/PBMC20206606502. PMID: 33372909.
  29. Veselovsky VA, Dyachkova MS, Menyaylo EA, Polyaeva PS, Olekhnovich EI, Shitikov EA, Bespiatykh DA, Semashko TA, Kasianov AS, Ilina EN, Danilenko VN, Klimina KM. Gene Networks Underlying the Resistance of Bifidobacterium longum to Inflammatory Factors. Front Immunol. 2020 Nov 16;11:595877. doi: 10.3389/fimmu.2020.595877. PMID: 33304352; PMCID: PMC7701253.
  30. Klimina KM, Voroshilova VN, Poluektova EU, Veselovsky VA, Yunes RA, Kovtun AS, Kudryavtseva AV, Kasianov AS, Danilenko VN. Toxin-Antitoxin Systems: A Tool for Taxonomic Analysis of Human Intestinal Microbiota. Toxins (Basel). 2020 Jun 12;12(6):388. doi: 10.3390/toxins12060388. PMID: 32545455; PMCID: PMC7354421.
  31. Pudova EA, Krasnov GS, Nyushko KM, Kobelyatskaya AA, Savvateeva MV, Poloznikov AA, Dolotkazin DR, Klimina KM, Guvatova ZG, Simanovsky SA, Gladysh NS, Tokarev AT, Melnikova NV, Dmitriev AA, Alekseev BY, Kaprin AD, Kiseleva MV, Snezhkina AV, Kudryavtseva AV. miRNAs expression signature potentially associated with lymphatic dissemination in locally advanced prostate cancer. BMC Med Genomics. 2020 Sep 18;13(Suppl 8):129. doi: 10.1186/s12920-020-00788-9. PMID: 32948204; PMCID: PMC7500008.
  32. Babenko VV, Millard A, Kulikov EE, Spasskaya NN, Letarova MA, Konanov DN, Belalov IS, Letarov AV. The ecogenomics of dsDNA bacteriophages in feces of stabled and feral horses. Comput Struct Biotechnol J. 2020 Nov 10;18:3457-3467. doi: 10.1016/j.csbj.2020.10.036. PMID: 33294140; PMCID: PMC7691681.
  33. Babenko VV, Podgorny OV, Manuvera VA, Kasianov AS, Manolov AI, Grafskaia EN, Shirokov DA, Kurdyumov AS, Vinogradov DV, Nikitina AS, Kovalchuk SI, Anikanov NA, Butenko IO, Pobeguts OV, Matyushkina DS, Rakitina DV, Kostryukova ES, Zgoda VG, Baskova IP, Trukhan VM, Gelfand MS, Govorun VM, Schiöth HB, Lazarev VN. Correction to: Draft genome sequences of Hirudo medicinalis and salivary transcriptome of three closely related medicinal leeches. BMC Genomics. 2020 Jul 22;21(1):503. doi: 10.1186/s12864-020-06897-0. Erratum for: BMC Genomics. 2020 Apr 29;21(1):331. PMID: 32698877; PMCID: PMC7374903.
  34. Babenko VV, Ziganshin RH, Weise C, Dyachenko I, Shaykhutdinova E, Murashev AN, Zhmak M, Starkov V, Hoang AN, Tsetlin V, Utkin Y. Novel Bradykinin-Potentiating Peptides and Three-Finger Toxins from Viper Venom: Combined NGS Venom Gland Transcriptomics and Quantitative Venom Proteomics of the Azemiops feae Viper. Biomedicines. 2020 Jul 28;8(8):249. doi: 10.3390/biomedicines8080249. PMID: 32731454; PMCID: PMC7460416.
  35. Grafskaia E, Pavlova E, Babenko VV, Latsis I, Malakhova M, Lavrenova V, Bashkirov P, Belousov D, Klinov D, Lazarev V. The Hirudo Medicinalis Microbiome Is a Source of New Antimicrobial Peptides. Int J Mol Sci. 2020 Sep 27;21(19):7141. doi: 10.3390/ijms21197141. PMID: 32992666; PMCID: PMC7582656.
  36. Boldyreva DI, Babenko VV, Kanygina AV, Lunina ON, Letarova MA, Kostryukova ES, Savvichev AS, Gorlenko VM, Letarov AV. Genome Sequences of a Green-Colored Chlorobium phaeovibrioides Strain Containing Two Plasmids and a Closely Related Plasmid-Free Brown-Colored Strain. Microbiol Resour Announc. 2020 Jan 9;9(2):e01172-19. doi: 10.1128/MRA.01172-19. PMID: 31919163; PMCID: PMC6952649.
  37. Babenko VV, Podgorny OV, Manuvera VA, Kasianov AS, Manolov AI, Grafskaia EN, Shirokov DA, Kurdyumov AS, Vinogradov DV, Nikitina AS, Kovalchuk SI, Anikanov NA, Butenko IO, Pobeguts OV, Matyushkina DS, Rakitina DV, Kostryukova ES, Zgoda VG, Baskova IP, Trukhan VM, Gelfand MS, Govorun VM, Schiöth HB, Lazarev VN. Draft genome sequences of Hirudo medicinalis and salivary transcriptome of three closely related medicinal leeches. BMC Genomics. 2020 Apr 29;21(1):331. doi: 10.1186/s12864-020-6748-0. Erratum in: BMC Genomics. 2020 Jul 22;21(1):503. PMID: 32349672; PMCID: PMC7191736.
  38. Zhgun ES, Kislun YV, Kalachniuk TN, Veselovsky VA, Urban AS, Tikhonova PO, Pavlenko AV, Ilchenko GN, Ilina EN. Otsenka urovnia metabolitov v fekaliiakh patsientov s vospalitel'nymi zabolevaniiami kishechnika [Evaluation of metabolites levels in feces of patients with inflammatory bowel diseases]. Biomed Khim. 2020 May;66(3):233-240. Russian. doi: 10.18097/PBMC20206603233. PMID: 32588829.
  39. Moreland E, Borisov OV, Semenova EA, Larin AK, Andryushchenko ON, Andryushchenko LB, Generozov EV, Williams AG, Ahmetov II. Polygenic Profile of Elite Strength Athletes. J Strength Cond Res. 2020 Dec 3. doi: 10.1519/JSC.0000000000003901. Epub ahead of print. PMID: 33278272.
  40. Díaz Ramírez J, Álvarez-Herms J, Castañeda-Babarro A, Larruskain J, Ramírez de la Piscina X, Borisov OV, Semenova EA, Kostryukova ES, Kulemin NA, Andryushchenko ON, Larin AK, Andryushchenko LB, Generozov EV, Ahmetov II, Odriozola A. The GALNTL6 Gene rs558129 Polymorphism Is Associated With Power Performance. J Strength Cond Res. 2020 Nov;34(11):3031-3036. doi: 10.1519/JSC.0000000000003814. PMID: 33105351; PMCID: PMC7580859.
  41. Boulygina EA, Borisov OV, Valeeva EV, Semenova EA, Kostryukova ES, Kulemin NA, Larin AK, Nabiullina RM, Mavliev FA, Akhatov AM, Andryushchenko ON, Andryushchenko LB, Zmijewski P, Generozov EV, Ahmetov II. Whole genome sequencing of elite athletes. Biol Sport. 2020 Sep;37(3):295-304. doi: 10.5114/biolsport.2020.96272. Epub 2020 Jun 10. PMID: 32879552; PMCID: PMC7433326.
  42. Kusić D, Connolly J, Kainulainen H, Semenova EA, Borisov OV, Larin AK, Popov DV, Generozov EV, Ahmetov II, Britton SL, Koch LG, Burniston JG. Striated muscle-specific serine/threonine-protein kinase beta segregates with high versus low responsiveness to endurance exercise training. Physiol Genomics. 2020 Jan 1;52(1):35-46. doi: 10.1152/physiolgenomics.00103.2019. Epub 2019 Dec 2. PMID: 31790338; PMCID: PMC6985788.
  43. Semenova EA, Miyamoto-Mikami E, Akimov EB, Al-Khelaifi F, Murakami H, Zempo H, Kostryukova ES, Kulemin NA, Larin AK, Borisov OV, Miyachi M, Popov DV, Boulygina EA, Takaragawa M, Kumagai H, Naito H, Pushkarev VP, Dyatlov DA, Lekontsev EV, Pushkareva YE, Andryushchenko LB, Elrayess MA, Generozov EV, Fuku N, Ahmetov II. The association of HFE gene H63D polymorphism with endurance athlete status and aerobic capacity: novel findings and a meta-analysis. Eur J Appl Physiol. 2020 Mar;120(3):665-673. doi: 10.1007/s00421-020-04306-8. Epub 2020 Jan 22. PMID: 31970519; PMCID: PMC7042188.
  44. Al-Khelaifi F, Yousri NA, Diboun I, Semenova EA, Kostryukova ES, Kulemin NA, Borisov OV, Andryushchenko LB, Larin AK, Generozov EV, Miyamoto-Mikami E, Murakami H, Zempo H, Miyachi M, Takaragawa M, Kumagai H, Naito H, Fuku N, Abraham D, Hingorani A, Donati F, Botrè F, Georgakopoulos C, Suhre K, Ahmetov II, Albagha O, Elrayess MA. Genome-Wide Association Study Reveals a Novel Association Between MYBPC3 Gene Polymorphism, Endurance Athlete Status, Aerobic Capacity and Steroid Metabolism. Front Genet. 2020 Jun 16;11:595. doi: 10.3389/fgene.2020.00595. PMID: 32612638; PMCID: PMC7308547.
  45. Turner DC, Gorski PP, Maasar MF, Seaborne RA, Baumert P, Brown AD, Kitchen MO, Erskine RM, Dos-Remedios I, Voisin S, Eynon N, Sultanov RI, Borisov OV, Larin AK, Semenova EA, Popov DV, Generozov EV, Stewart CE, Drust B, Owens DJ, Ahmetov II, Sharples AP. DNA methylation across the genome in aged human skeletal muscle tissue and muscle-derived cells: the role of HOX genes and physical activity. Sci Rep. 2020 Sep 21;10(1):15360. doi: 10.1038/s41598-020-72730-z. PMID: 32958812; PMCID: PMC7506549.
  46. Klimina KM, Batotsyrenova EG, Yunes RA, Gilyaeva EH, Poluektova EU, Kostrova TA, Kudryavtseva AV, Odorskaya MV, Kashuro VA, Kasianov AS, Ivanov MB, Danilenko VN. The effects of desynchronosis on the gut microbiota composition and physiological parameters of rats. BMC Microbiol. 2019 Jul 12;19(1):160. doi: 10.1186/s12866-019-1535-2. PMID: 31299889; PMCID: PMC6626387.
  47. Bespyatykh J, Shitikov E, Guliaev A, Smolyakov A, Klimina K, Veselovsky V, Malakhova M, Arapidi G, Dogonadze M, Manicheva O, Bespiatykh D, Mokrousov I, Zhuravlev V, Ilina E, Govorun V. System OMICs analysis of Mycobacterium tuberculosis Beijing B0/W148 cluster. Sci Rep. 2019 Dec 17;9(1):19255. doi: 10.1038/s41598-019-55896-z. Erratum in: Sci Rep. 2020 Mar 6;10(1):4511. PMID: 31848428; PMCID: PMC6917788.
  48. Olekhnovich EI, Manolov AI, Samoilov AE, Prianichnikov NA, Malakhova MV, Tyakht AV, Pavlenko AV, Babenko VV, Larin AK, Kovarsky BA, Starikova EV, Glushchenko OE, Safina DD, Markelova MI, Boulygina EA, Khusnutdinova DR, Malanin SY, Abdulkhakov SR, Abdulkhakov RA, Grigoryeva TV, Kostryukova ES, Govorun VM, Ilina EN. Shifts in the Human Gut Microbiota Structure Caused by Quadruple Helicobacter pylori Eradication Therapy. Front Microbiol. 2019 Aug 27;10:1902. doi: 10.3389/fmicb.2019.01902. PMID: 31507546; PMCID: PMC6718723.
  49. Goloshchapov OV, Olekhnovich EI, Sidorenko SV, Moiseev IS, Kucher MA, Fedorov DE, Pavlenko AV, Manolov AI, Gostev VV, Veselovsky VA, Klimina KM, Kostryukova ES, Bakin EA, Shvetcov AN, Gumbatova ED, Klementeva RV, Shcherbakov AA, Gorchakova MV, Egozcue JJ, Pawlowsky-Glahn V, Suvorova MA, Chukhlovin AB, Govorun VM, Ilina EN, Afanasyev BV. Long-term impact of fecal transplantation in healthy volunteers. BMC Microbiol. 2019 Dec 30;19(1):312. doi: 10.1186/s12866-019-1689-y. PMID: 31888470; PMCID: PMC6938016.
  50. Glushchenko OE, Prianichnikov NA, Olekhnovich EI, Manolov AI, Tyakht AV, Starikova EV, Odintsova VE, Kostryukova ES, Ilina EI. VERA: agent-based modeling transmission of antibiotic resistance between human pathogens and gut microbiota. Bioinformatics. 2019 Oct 1;35(19):3803-3811. doi: 10.1093/bioinformatics/btz154. PMID: 30825306.
  51. Belova AM, Basmanov DV, Babenko VV, Podgorny OV, Mitko TV, Prusakov KA, Klinov DV, Lazarev VN. Two novel transcriptional reporter systems for monitoring Helicobacter pylori stress responses. Plasmid. 2019 Nov;106:102442. doi: 10.1016/j.plasmid.2019.102442. Epub 2019 Nov 1. PMID: 31669286.
  52. Golomidova AK, Kulikov EE, Babenko VV, Ivanov PA, Prokhorov NS, Letarov AV. Escherichia coli bacteriophage Gostya9, representing a new species within the genus T5virus. Arch Virol. 2019 Mar;164(3):879-884. doi: 10.1007/s00705-018-4113-2. Epub 2018 Dec 1. PMID: 30506471.
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